Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70021.1IS1137, transposase orfB; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF00665. (317 aa)    
Predicted Functional Partners:
ABK70202.1
IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.
 
  
 0.925
ABK73160.1
ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.
 
  
 0.702
ABK74587.1
ISMsm1, transposase orfA; Identified by similarity to GP:16551202; match to protein family HMM PF01527.
 
  
 0.694
ABK71031.1
ISMsm1, transposase orfA; Similar at the protein level to ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF01527.
 
  
 0.694
ABK72007.1
IS3 family protein element, transposase orfA; Identified by similarity to GP:15619022; match to protein family HMM PF01527.
 
  
 0.690
ABK73016.1
IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.
 
  
 0.685
ABK74886.1
IS1137, transposase orfA; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF01527.
 
  
 0.675
ABK70227.1
Identified by match to protein family HMM PF00665.
  
    0.640
ABK75530.1
Transposase; Identified by match to protein family HMM PF00665.
 
     0.639
ABK75552.1
Transposase; Identified by match to protein family HMM PF00665.
 
     0.623
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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