Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
ABK72103.1Putative transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702. (254 aa)    
Predicted Functional Partners:
ABK71008.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073.
       0.781
ABK69763.1
Identified by match to protein family HMM PF01636.
       0.771
ABK73975.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
    0.765
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.652
ABK74123.1
Transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.637
ABK73155.1
Transcriptional regulator, GntR family protein; Identified by similarity to SP:P33233; match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.598
ABK73341.1
Transcriptional regulator, putative; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.590
ABK72657.1
Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.579
ABK71332.1
Amino acid permease; Identified by match to protein family HMM PF00324.
 
     0.566
ABK75586.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.534
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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