Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71332.1Amino acid permease; Identified by match to protein family HMM PF00324. (525 aa)    
Predicted Functional Partners:
ABK69762.1
Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
     
 0.806
ABK69763.1
Identified by match to protein family HMM PF01636.
 
  
  0.797
ABK71008.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073.
 
 0.720
ABK71835.1
Aminotransferase class-III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.719
ABK71217.1
Amino acid permease; Identified by match to protein family HMM PF00324.
  
  
 0.703
ABK70029.1
glutamyl-tRNA(Gln) amidotransferase subunit A; Identified by match to protein family HMM PF00392; match to protein family HMM PF01425; match to protein family HMM PF07729.
   
 0.649
ABK71639.1
Permease, cytosine/purines, uracil, thiamine, allantoin family protein; Identified by match to protein family HMM PF02133; Belongs to the purine-cytosine permease (2.A.39) family.
  
  
 0.630
TynA
Copper methylamine oxidase; Identified by match to protein family HMM PF01179; match to protein family HMM PF02727; match to protein family HMM PF02728.
 
  
 0.605
ABK74343.1
Alpha-amylase 3; Identified by match to protein family HMM PF00128.
  
 0.595
ABK74424.1
Identified by match to protein family HMM PF00128.
  
 0.595
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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