ABK71723.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71723.1

Hypothetical protein; Identified by Glimmer2; putative. (145 aa)

Predicted Functional Partners:

ABK74117.1

0.579

ABK70355.1

0.579

ABK70886.1

0.578

ABK74575.1

0.444

ABK69605.1

0.439

ABK69772.1

0.439

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69605.1	ABK69772.1	MSMEG_0808	MSMEG_0809	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	0.997
ABK69605.1	ABK70355.1	MSMEG_0808	MSMEG_0806	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	0.643
ABK69605.1	ABK70886.1	MSMEG_0808	MSMEG_0807	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	0.645
ABK69605.1	ABK71723.1	MSMEG_0808	MSMEG_0804	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Hypothetical protein; Identified by Glimmer2; putative.	0.439
ABK69605.1	ABK74117.1	MSMEG_0808	MSMEG_0805	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Conserved hypothetical protein.	0.858
ABK69605.1	ABK74575.1	MSMEG_0808	MSMEG_0811	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	Oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.	0.996
ABK69772.1	ABK69605.1	MSMEG_0809	MSMEG_0808	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	0.997
ABK69772.1	ABK70355.1	MSMEG_0809	MSMEG_0806	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	0.625
ABK69772.1	ABK70886.1	MSMEG_0809	MSMEG_0807	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	0.629
ABK69772.1	ABK71723.1	MSMEG_0809	MSMEG_0804	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Hypothetical protein; Identified by Glimmer2; putative.	0.439
ABK69772.1	ABK74117.1	MSMEG_0809	MSMEG_0805	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Conserved hypothetical protein.	0.575
ABK69772.1	ABK74575.1	MSMEG_0809	MSMEG_0811	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	Oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.	0.996
ABK70355.1	ABK69605.1	MSMEG_0806	MSMEG_0808	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	0.643
ABK70355.1	ABK69772.1	MSMEG_0806	MSMEG_0809	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	0.625
ABK70355.1	ABK70886.1	MSMEG_0806	MSMEG_0807	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	0.904
ABK70355.1	ABK71723.1	MSMEG_0806	MSMEG_0804	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Hypothetical protein; Identified by Glimmer2; putative.	0.579
ABK70355.1	ABK74117.1	MSMEG_0806	MSMEG_0805	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Conserved hypothetical protein.	0.880
ABK70355.1	ABK74575.1	MSMEG_0806	MSMEG_0811	Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.	0.616
ABK70886.1	ABK69605.1	MSMEG_0807	MSMEG_0808	Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Possible chalcone synthase Pks10; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.	0.645
ABK70886.1	ABK69772.1	MSMEG_0807	MSMEG_0809	Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.	Isoprenylcysteine carboxyl methyltransferase; Identified by match to protein family HMM PF04140.	0.629