Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74282.1Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
ABK72519.1
Conserved hypothetical protein.
       0.815
ABK75481.1
Succinic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.753
ABK72190.1
Conserved hypothetical protein.
   
 0.703
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.659
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
  
 0.590
ABK70141.1
HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
     
 0.576
ABK74053.1
Transposase.
    
 0.576
ABK76075.1
LprE protein.
    
 0.576
ABK73245.1
Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069.
       0.564
ABK75671.1
Probable conserved transmembrane protein.
  
  
 0.560
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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