Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK70292.1Conserved hypothetical protein. (425 aa)    
Predicted Functional Partners:
ABK73511.1
Tagatose-1,6-bisphosphate aldolase GatY; Identified by match to protein family HMM PF01116.
     0.981
ABK70474.1
2-hydroxy-3-oxopropionate reductase; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505.
 
  
 0.917
ABK70662.1
Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
    0.775
ABK75287.1
Bacterial regulatory protein, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
     0.649
ABK75098.1
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF03447.
 
     0.636
ABK73984.1
Tagatose-1,6-bisphosphate aldolase GatY; Identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167.
      0.620
mmsB
3-hydroxyisobutyrate dehydrogenase; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.
 
  
 0.468
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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