STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaC4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627. (186 aa)    
Predicted Functional Partners:
ABK70827.1
Identified by match to protein family HMM PF01381; match to protein family HMM PF06114.
     
 0.810
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426.
     
 0.700
ABK73495.1
4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627.
    
 0.684
pcaC-6
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
 
  
 0.634
pcaD
3-oxoadipate enol-lactonase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427.
  
 
 0.585
ABK71067.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
    0.578
ABK75938.1
Conserved hypothetical protein.
     
 0.537
ABK71798.1
Conserved hypothetical protein.
  
   
 0.529
ABK74560.1
acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.
 
     0.514
ABK72121.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.499
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.