Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70827.1Identified by match to protein family HMM PF01381; match to protein family HMM PF06114. (478 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
     
 0.810
ABK74576.1
2-methylcitrate dehydratase 2; Identified by match to protein family HMM PF03972.
 
  
 0.578
ABK75938.1
Conserved hypothetical protein.
       0.554
ABK72121.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.554
aceA
Isocitrate lyase; Identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346.
 
   
 0.540
ABK74560.1
acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.
  
    0.475
ABK73934.1
Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00196.
   
 0.474
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
  
 
 0.440
ABK72215.1
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.439
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.428
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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