STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75938.1Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
ABK71518.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.823
ABK75404.1
Flavohemoprotein, putative; Identified by similarity to SP:P39662; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
  
  
 0.779
ABK72121.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ABK73388.1
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
     
 0.772
ABK72663.1
Flavohemoprotein; Identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
  
  
 0.700
ABK70827.1
Identified by match to protein family HMM PF01381; match to protein family HMM PF06114.
       0.554
ABK74560.1
acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.
       0.553
PduC
Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286.
      
 0.539
pcaC
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
     
 0.537
secBL
Hypothetical protein; Chaperone component of an orphan antitoxin chaperone (AC) system; there is no toxin gene in close genomic proximity. When expressed in E.coli complements the cold-sensitive phenotype of a secB deletion, suggesting it may have a generic chaperone function. Does not however complement the toxin-neutralizing effect of its M.tuberculosis paralog Rv1957 (AC P95257) in E.coli, probably because the antitoxin genes are not from the same family.
      
 0.530
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.