Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70523.1Conserved hypothetical protein. (94 aa)    
Predicted Functional Partners:
ABK73487.1
Conserved hypothetical protein.
  
    0.845
ABK70648.1
Heparin-binding hemagglutinin.
 
     0.781
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
    0.775
ABK75511.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04167.
  
     0.700
ABK70804.1
Conserved hypothetical protein.
  
     0.675
ABK73146.1
Putative secreted alanine rich protein.
  
     0.675
ABK75842.1
Conserved hypothetical protein.
  
     0.675
ABK73961.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02569.
  
     0.667
ABK72868.1
Conserved hypothetical protein.
  
     0.647
ABK74778.1
Probable conserved transmembrane protein.
  
     0.643
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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