Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70477.1Identified by match to protein family HMM PF03734. (452 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.873
ABK70168.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
     
 0.825
ABK71563.1
Phosphoribulokinase/uridine kinase.
      
 0.820
ABK76213.1
Identified by match to protein family HMM PF03734.
  
  
 0.772
ABK70571.1
Conserved hypothetical protein.
 
     0.702
ABK75368.1
Putative conserved exported protein.
  
   
 0.659
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Carboxypeptidase that cleaves terminal D-alanine from peptidoglycan in the mycobacterial cell wall. May cleave L-Lys-D-Ala and/or D-Ala-D-Ala peptide bonds. Exerts important effects on mycobacterial cell morphology and cell division. Belongs to the peptidase S13 family.
 
   
 0.618
ABK74178.1
Conserved hypothetical protein.
 
     0.599
glsA
Thermolabile glutaminase; Identified by match to protein family HMM PF04960; Belongs to the glutaminase family.
  
  
 0.573
ABK74452.1
Identified by match to protein family HMM PF00795.
 
    0.572
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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