Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72671.1Conserved hypothetical protein. (356 aa)    
Predicted Functional Partners:
ABK74426.1
Conserved hypothetical protein.
 
     0.866
ABK73169.1
Probable conserved transmembrane protein rich in alanine.
  
   
 0.839
ABK70196.1
Identified by match to protein family HMM PF02541.
       0.801
ABK72565.1
Identified by match to protein family HMM PF01261.
       0.792
ABK75842.1
Conserved hypothetical protein.
  
    0.777
ABK74859.1
Conserved hypothetical protein.
  
     0.769
ABK73297.1
Conserved hypothetical protein.
  
    0.767
ABK71110.1
Conserved hypothetical protein.
  
     0.762
ABK74693.1
Conserved hypothetical protein.
  
     0.756
ABK74778.1
Probable conserved transmembrane protein.
  
     0.753
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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