STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72379.1Putative conserved transmembrane protein. (164 aa)    
Predicted Functional Partners:
ABK74808.1
Putative transmembrane protein.
  
    0.937
ABK70745.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
  
   
 0.917
hemD
uroporphyrinogen-III synthase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602.
  
    0.809
ABK71621.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.766
ABK69526.1
LppL protein.
  
     0.753
ABK72687.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.752
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
    0.736
ABK73297.1
Conserved hypothetical protein.
  
     0.726
ABK73452.1
Conserved hypothetical protein.
  
     0.723
ABK74323.1
Conserved hypothetical protein.
  
     0.717
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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