Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK69958.1Conserved membrane protein; Identified by match to protein family HMM PF05140. (549 aa)    
Predicted Functional Partners:
ccsB
Cytochrome c-type biogenesis protein CcsB; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144.
 
  
 0.991
ABK73972.1
Cytochrome C biogenesis protein transmembrane region; Identified by match to protein family HMM PF02683.
 
  
 0.983
ABK72796.1
Conserved hypothetical protein.
 
  
 0.977
ABK72985.1
Identified by match to protein family HMM PF00300.
 
    0.927
ABK72065.1
ATP/GTP-binding integral membrane protein; Identified by match to protein family HMM PF03969.
  
   
 0.838
ABK75179.1
Very-long-chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.
      
 0.820
ABK75074.1
Ubiquinol-cytochrome c reductase cytochrome c subunit; Identified by match to protein family HMM PF00034.
 
  
 0.819
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR00713.
  
  
 0.818
ABK72669.1
Anion-transporting ATPase; Identified by match to protein family HMM PF02374.
  
   
 0.807
hemD
uroporphyrinogen-III synthase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602.
 
    0.805
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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