Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK71353.1GTP cyclohydrolase II; Identified by match to protein family HMM PF03795. (91 aa)    
Predicted Functional Partners:
ABK73807.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
       0.789
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  0.617
ABK73153.1
Coenzyme A transferase, subunit B.
 
    0.482
adhc1
Alcohol dehydrogenase, zinc-containing; Prefers aldehydes over alcohols.
       0.472
hisE
phosphoribosyl-ATP pyrophosphohydrolase; Identified by match to protein family HMM PF01503.
  
    0.454
ABK73752.1
Muconolactone delta-isomerase 1; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.
  
    0.429
ABK69773.1
Muconolactone delta-isomerase; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.
  
    0.429
gmhA
Phosphoheptose isomerase.
   
    0.414
ABK69753.1
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.403
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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