Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73788.1Integral membrane protein; Identified by match to protein family HMM PF02588. (231 aa)    
Predicted Functional Partners:
ABK75792.1
Nudix hydrolase; Identified by match to protein family HMM PF00293.
       0.789
ABK70108.1
ABC-type molybdenum transport system, ATPase component; Identified by match to protein family HMM PF00005.
       0.787
ABK70859.1
Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
       0.781
ABK70532.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
ABK76166.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
 
     0.772
ABK73048.1
Methyltransferase, UbiE/COQ5 family protein.
       0.680
ABK73789.1
SAM-dependent methyltransferase.
       0.673
ABK73822.1
Integral membrane protein; Identified by match to protein family HMM PF00892.
  
    0.524
ABK70142.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
 
    0.519
ABK73065.1
Immunogenic protein MPB64/MPT64.
       0.507
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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