Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75069.1Identified by match to protein family HMM PF07905. (471 aa)    
Predicted Functional Partners:
ABK74498.1
GAF domain protein; Identified by match to protein family HMM PF01590.
 
     0.759
ABK76158.1
Regulator of polyketide synthase expression, putative; Identified by match to protein family HMM PF07905.
  
    0.757
ABK74518.1
Identified by match to protein family HMM PF07905.
  
     0.675
ABK71928.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00903.
  
    0.633
ABK75017.1
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.607
ABK75740.1
Amino acid permease-associated region; Identified by match to protein family HMM PF00324.
 
     0.603
ABK74853.1
Transcriptional regulator, CdaR, putative; Identified by match to protein family HMM PF02954.
  
    0.527
ABK69917.1
3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.
       0.516
ABK70436.1
3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.
       0.516
ABK73861.1
GAF domain protein, putative; Identified by match to protein family HMM PF01590.
 
     0.506
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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