Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74490.1Conserved hypothetical protein; Identified by match to protein family HMM TIGR00026. (149 aa)    
Predicted Functional Partners:
ABK71761.1
Conserved hypothetical protein TIGR00026.
  
     0.742
ABK75173.1
Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.
  
    0.730
ABK70765.1
Identified by match to protein family HMM PF04909.
  
    0.640
ABK70247.1
Conserved hypothetical protein.
  
     0.547
ABK73608.1
Probable regulatory protein; Identified by match to protein family HMM PF00440.
  
    0.540
ABK74316.1
Conserved hypothetical protein.
  
     0.535
ABK72704.1
Identified by match to protein family HMM PF04909.
  
     0.484
ABK69869.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.482
ABK75794.1
Large subunit of N,N-dimethylformamidase.
       0.482
ABK73750.1
Identified by match to protein family HMM PF04909.
  
     0.479
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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