Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69869.1Hypothetical protein; Identified by Glimmer2; putative. (134 aa)    
Predicted Functional Partners:
ABK75794.1
Large subunit of N,N-dimethylformamidase.
  
   0.843
ABK74416.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.691
ABK76056.1
ABC-type transport system ATP-binding protein II; Identified by match to protein family HMM PF00005.
  
 
 0.613
ABK75258.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.613
ABK71843.1
Branched-chain amino acid transport system ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.613
ABK75324.1
ABC-type transport system permease protein I; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.587
ABK75980.1
Branched-chain amino acid ABC-type transport system, permease component; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.587
ABK72908.1
ABC transporter branched chain amino acid transport permease; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.587
ABK73482.1
Integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.587
ABK75444.1
ABC-type transport system ATP-binding protein I; Identified by match to protein family HMM PF00005.
  
 
 0.581
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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