Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74416.1Hypothetical protein; Identified by Glimmer2; putative. (252 aa)    
Predicted Functional Partners:
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
  
 
 0.837
ABK75794.1
Large subunit of N,N-dimethylformamidase.
  
    0.701
ABK69869.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.691
ABK69916.1
Conserved hypothetical protein.
  
 0.680
ABK72776.1
Toluate 1,2-dioxygenase beta subunit; Identified by match to protein family HMM PF00866.
  
 0.680
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
  
 
 0.618
ABK73263.1
Putative response regulator; Identified by match to protein family HMM PF00196.
     
 0.527
ABK75173.1
Hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.
     
 0.478
ABK74490.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR00026.
       0.436
ABK73847.1
2,4-dienoyl-coA reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.
  
 
 0.404
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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