Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72282.1Conserved hypothetical protein. (125 aa)    
Predicted Functional Partners:
ABK76160.1
Amino acid permease; Identified by match to protein family HMM PF00324.
       0.773
ABK73386.1
Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.
       0.773
ABK71479.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Identified by match to protein family HMM PF00795.
       0.773
ABK73738.1
Transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
       0.542
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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