Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69555.1Hypothetical protein; Identified by Glimmer2; putative. (42 aa)    
Predicted Functional Partners:
ABK73681.1
Cobalamin synthesis protein; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
     
 0.795
ABK70556.1
Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.
      
 0.537
ABK71462.1
ABC heavy metal transporter, inner membrane subunit; Identified by match to protein family HMM PF00950.
      
 0.534
ABK70969.1
Cobalamin synthesis protein/P47K; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
      
 0.534
ABK75181.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.534
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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