Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK73681.1Cobalamin synthesis protein; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. (332 aa)    
Predicted Functional Partners:
ABK69555.1
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.795
ABK70556.1
Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.
 
  
 0.788
ABK74073.1
CobW/P47K C- domain protein; Identified by match to protein family HMM PF07683.
 
     0.706
ABK71462.1
ABC heavy metal transporter, inner membrane subunit; Identified by match to protein family HMM PF00950.
  
  
 0.651
rpsN-2
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.638
rpmE-2
Ribosomal protein L31; Identified by match to protein family HMM PF01197; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.631
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.589
cobN
Cobaltochelatase, CobN subunit; Identified by match to protein family HMM PF02514; match to protein family HMM TIGR02257.
 
  
 0.576
ABK73631.1
Solute-binding lipoprotein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.567
ABK75181.1
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.552
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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