STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73325.1Probable conserved transmembrane protein. (198 aa)    
Predicted Functional Partners:
ABK72965.1
Putative ferredoxin FdxA; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
 0.798
ABK74791.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.735
ABK75242.1
Probable antibiotic-transport integral membrane leucine and valine rich protein abc transporter.
  
    0.693
ABK72831.1
Fluoroquinolone transport system permease protein; Probable antibiotic-transport integral membrane leucine and alanine and valine rich protein abc transporter.
  
    0.674
ABK73366.1
Conserved hypothetical protein.
 
  
 0.672
ABK75219.1
Regulatory protein, ArsR; Identified by match to protein family HMM PF01726.
  
    0.646
ABK76028.1
Caax amino protease family protein; Identified by match to protein family HMM PF02517.
  
    0.619
ABK73981.1
Conserved hypothetical protein.
  
  
 0.607
ABK72554.1
Conserved hypothetical protein.
  
    0.577
ABK70463.1
Conserved hypothetical protein.
  
  
 0.574
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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