ABK74601.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK74601.1

Identified by match to protein family HMM PF01381; match to protein family HMM PF07883. (201 aa)

Predicted Functional Partners:

ABK72545.1

0.766

ABK75999.1

0.730

ABK74654.1

0.657

ABK70099.1

0.635

ABK70243.1

0.634

ABK70715.1

0.628

ABK72604.1

0.593

ABK71207.1

0.574

ABK70158.1

0.558

ABK71275.1

0.544

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70099.1	ABK70243.1	MSMEG_3225	MSMEG_6459	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.999
ABK70099.1	ABK74601.1	MSMEG_3225	MSMEG_1151	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.	0.635
ABK70158.1	ABK70715.1	MSMEG_1154	MSMEG_1152	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.802
ABK70158.1	ABK71207.1	MSMEG_1154	MSMEG_1155	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.793
ABK70158.1	ABK71275.1	MSMEG_1154	MSMEG_1158	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.690
ABK70158.1	ABK72545.1	MSMEG_1154	MSMEG_1153	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.839
ABK70158.1	ABK74601.1	MSMEG_1154	MSMEG_1151	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.	0.558
ABK70158.1	ABK75999.1	MSMEG_1154	MSMEG_1156	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Dihydrodipicolinate synthetase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.	0.831
ABK70243.1	ABK70099.1	MSMEG_6459	MSMEG_3225	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.999
ABK70243.1	ABK74601.1	MSMEG_6459	MSMEG_1151	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.	0.634
ABK70715.1	ABK70158.1	MSMEG_1152	MSMEG_1154	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.802
ABK70715.1	ABK71207.1	MSMEG_1152	MSMEG_1155	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.813
ABK70715.1	ABK71275.1	MSMEG_1152	MSMEG_1158	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.649
ABK70715.1	ABK72545.1	MSMEG_1152	MSMEG_1153	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.887
ABK70715.1	ABK74601.1	MSMEG_1152	MSMEG_1151	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.	0.628
ABK70715.1	ABK75999.1	MSMEG_1152	MSMEG_1156	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Dihydrodipicolinate synthetase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.	0.872
ABK71207.1	ABK70158.1	MSMEG_1155	MSMEG_1154	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.793
ABK71207.1	ABK70715.1	MSMEG_1155	MSMEG_1152	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.813
ABK71207.1	ABK71275.1	MSMEG_1155	MSMEG_1158	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.708
ABK71207.1	ABK72545.1	MSMEG_1155	MSMEG_1153	carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.863