Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK71207.1carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)    
Predicted Functional Partners:
ABK75999.1
Dihydrodipicolinate synthetase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
   
 0.897
ABK72545.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.
 
  
 0.859
ABK73181.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
  
 0.840
ABK70158.1
Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
 
 0.827
ABK70236.1
acetyl-CoA acetyltransferase.
 
 0.810
ABK70715.1
Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
     0.809
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.782
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 0.765
ABK75265.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
  
    0.762
ABK71275.1
5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.761
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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