STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71275.15-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (475 aa)    
Predicted Functional Partners:
ABK71198.1
Aldehyde dehydrogenase, thermostable; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 
0.911
ABK76098.1
5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 
0.910
ABK75999.1
Dihydrodipicolinate synthetase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
  
 0.777
ABK73181.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
 
 
 0.750
ABK72545.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.
 
  
 0.729
ABK71207.1
carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.708
ABK70158.1
Formyl-coenzyme A transferase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
 
 0.690
ABK70715.1
Citrate-proton symporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
  
 0.649
ABK74601.1
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
 
  
 0.544
ABK69760.1
Conserved hypothetical protein.
  
 0.535
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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