Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72830.1Conserved hypothetical protein; Identified by match to protein family HMM PF04461; Belongs to the UPF0234 family. (163 aa)    
Predicted Functional Partners:
ABK73453.1
Conserved hypothetical protein.
  
  
 0.832
ABK74818.1
Conserved hypothetical protein.
   
  
 0.822
ABK70534.1
Conserved hypothetical protein.
      
 0.821
ABK73760.1
Conserved hypothetical protein.
      
 0.821
ABK74525.1
Conserved hypothetical protein.
      
 0.809
ABK72092.1
Conserved hypothetical protein.
      
 0.795
ABK74527.1
Conserved hypothetical protein; Belongs to the UPF0336 family.
      
 0.795
ABK70393.1
Identified by match to protein family HMM PF01266.
  
    0.580
ABK71061.1
Conserved hypothetical protein; Identified by match to protein family HMM PF06778.
      
 0.579
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.572
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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