Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK76032.1Conserved hypothetical protein. (403 aa)    
Predicted Functional Partners:
ABK74862.1
Conserved hypothetical protein.
 
  
 0.796
ABK75772.1
Conserved hypothetical protein.
  
     0.773
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
 
     0.758
ABK73081.1
Antigen 34 kDa.
 
     0.757
ABK69833.1
Conserved hypothetical protein.
  
 
 0.754
ABK75418.1
Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294.
 
     0.752
ABK72090.1
Conserved hypothetical protein.
  
     0.749
ABK70453.1
Conserved hypothetical protein.
 
  
 0.748
ABK70539.1
Conserved hypothetical protein.
 
 
 0.742
ABK74255.1
Immunogenic protein MPT63.
  
     0.741
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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