Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75340.1Conserved hypothetical protein; Identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374. (791 aa)    
Predicted Functional Partners:
ABK72090.1
Conserved hypothetical protein.
  
     0.695
ABK73081.1
Antigen 34 kDa.
 
     0.624
ABK72474.1
Conserved hypothetical protein.
  
     0.619
ABK74785.1
Identified by match to protein family HMM PF00903.
 
     0.582
ABK76011.1
Conserved hypothetical protein.
  
     0.571
ABK70482.1
LprC protein.
  
   
 0.566
ABK74007.1
Conserved hypothetical protein.
 
     0.560
ABK72735.1
Conserved hypothetical protein.
  
    0.536
ABK73675.1
Conserved hypothetical protein.
 
   
 0.536
ABK75672.1
Probable conserved integral membrane protein; Identified by match to protein family HMM PF02517.
 
    0.524
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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