ABK71016.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71016.1

Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553. (132 aa)

Predicted Functional Partners:

ABK70406.1

0.477

ABK70701.1

0.477

ABK72479.1

0.477

ABK73645.1

0.477

ABK75268.1

0.477

ABK73728.1

0.469

arsC

0.452

apt

0.440

iscS

0.433

ABK74642.1

0.433

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70406.1	ABK71016.1	MSMEG_1827	MSMEG_1264	Hydrolase, nudix family protein, putative; Identified by match to protein family HMM PF00293.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.477
ABK70701.1	ABK71016.1	MSMEG_2936	MSMEG_1264	Identified by match to protein family HMM PF00293.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.477
ABK71016.1	ABK70406.1	MSMEG_1264	MSMEG_1827	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Hydrolase, nudix family protein, putative; Identified by match to protein family HMM PF00293.	0.477
ABK71016.1	ABK70701.1	MSMEG_1264	MSMEG_2936	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Identified by match to protein family HMM PF00293.	0.477
ABK71016.1	ABK72479.1	MSMEG_1264	MSMEG_3745	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Identified by match to protein family HMM PF00293.	0.477
ABK71016.1	ABK73645.1	MSMEG_1264	MSMEG_4488	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Identified by match to protein family HMM PF00293.	0.477
ABK71016.1	ABK73728.1	MSMEG_1264	MSMEG_4308	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	5'-nucleotidase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	0.469
ABK71016.1	ABK74642.1	MSMEG_1264	MSMEG_2357	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.433
ABK71016.1	ABK75268.1	MSMEG_1264	MSMEG_5118	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Nudix hydrolase; Identified by match to protein family HMM PF00293.	0.477
ABK71016.1	apt	MSMEG_1264	MSMEG_2964	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.440
ABK71016.1	arsC	MSMEG_1264	MSMEG_5428	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Arsenate reductase; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; Belongs to the ArsC family.	0.452
ABK71016.1	iscS	MSMEG_1264	MSMEG_1242	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266.	0.433
ABK72479.1	ABK71016.1	MSMEG_3745	MSMEG_1264	Identified by match to protein family HMM PF00293.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.477
ABK73645.1	ABK71016.1	MSMEG_4488	MSMEG_1264	Identified by match to protein family HMM PF00293.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.477
ABK73728.1	ABK71016.1	MSMEG_4308	MSMEG_1264	5'-nucleotidase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.469
ABK74642.1	ABK71016.1	MSMEG_2357	MSMEG_1264	Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.433
ABK74642.1	iscS	MSMEG_2357	MSMEG_1242	Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266.	0.935
ABK75268.1	ABK71016.1	MSMEG_5118	MSMEG_1264	Nudix hydrolase; Identified by match to protein family HMM PF00293.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.477
apt	ABK71016.1	MSMEG_2964	MSMEG_1264	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.440
arsC	ABK71016.1	MSMEG_5428	MSMEG_1264	Arsenate reductase; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; Belongs to the ArsC family.	Prophage Lp1 protein 5; Identified by match to protein family HMM PF07553.	0.452