Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74781.1Identified by match to protein family HMM PF00440. (202 aa)    
Predicted Functional Partners:
ABK70904.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
    
 0.614
ABK72862.1
EthD protein; Identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118.
       0.588
ABK75057.1
Peptidase S15; Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.
       0.513
ABK74645.1
ISMsm1, transposase orfB; Identified by similarity to GP:16551202; match to protein family HMM PF00665.
   
  
 0.439
ABK75224.1
Oxidoreductase; Identified by match to protein family HMM PF00106.
     
 0.427
ABK75317.1
TonB-dependent receptor; Identified by match to protein family HMM PF02082; match to protein family HMM PF08220.
      
 0.420
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (34%) [HD]