Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75757.1Identified by match to protein family HMM PF01522. (303 aa)    
Predicted Functional Partners:
ABK75018.1
Conserved hypothetical protein.
     0.865
ABK75093.1
Asp/Glu racemase; Identified by match to protein family HMM PF01177.
 
     0.860
ABK72177.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; Identified by match to protein family HMM PF02366.
      
 0.806
ABK76174.1
Major facilitator superfamily protein MFS_1; Identified by match to protein family HMM PF07690.
  
    0.762
ABK71590.1
Transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
       0.628
secA2
ATPase SecA2; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
     
 0.557
ABK75008.1
Hydantoin racemase; Identified by match to protein family HMM PF01177.
 
 
  0.540
ABK72225.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase; Identified by match to protein family HMM PF01557.
  
    0.539
ABK75241.1
Conserved hypothetical protein.
  
    0.503
aftD
Conserved hypothetical protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of an arabinofuranosyl (Araf) residue from the sugar donor decaprenyl-phospho-arabinose (DPA) on the C-3 of an alpha-(1->5)-linked Araf from the arabinan backbone of AG.
  
 
 0.483
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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