STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73114.1Identified by match to protein family HMM PF00753. (245 aa)    
Predicted Functional Partners:
ABK71421.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
  
  
 0.701
ABK71920.1
Conserved hypothetical protein.
  
 
 0.628
ABK71737.1
Conserved hypothetical protein.
  
 
 0.621
ABK74676.1
Transcriptional regulator, BadM/Rrf2 family protein; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
     
 0.579
ABK75404.1
Flavohemoprotein, putative; Identified by similarity to SP:P39662; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
     
 0.570
ABK71854.1
Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
 
 
 
 0.492
ABK74425.1
Conserved hypothetical protein.
  
    0.453
ABK73720.1
Conserved hypothetical protein.
  
    0.429
ABK75667.1
Identified by match to protein family HMM PF00581; match to protein family HMM PF00753.
 
 
0.418
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.413
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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