Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73114.1Identified by match to protein family HMM PF00753. (245 aa)    
Predicted Functional Partners:
ABK70136.1
D-lactate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.
    
 0.761
ABK71421.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.
  
    0.608
ABK74676.1
Transcriptional regulator, BadM/Rrf2 family protein; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
     
 0.572
ABK75404.1
Flavohemoprotein, putative; Identified by similarity to SP:P39662; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
     
 0.561
ABK69677.1
Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.
  
 0.532
ABK71928.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00903.
 
 0.472
ABK71854.1
Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
 
 
 
 0.462
ABK74425.1
Conserved hypothetical protein.
       0.447
ABK71920.1
Conserved hypothetical protein.
  
 0.438
ABK73818.1
Rhodanese domain protein/cystathionine beta-lyase.
  
 0.438
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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