ABK71811.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71811.1

Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. (305 aa)

Predicted Functional Partners:

ABK73982.1

0.970

ABK70856.1

0.908

ABK74423.1

0.860

ABK73536.1

0.843

ABK71573.1

0.831

ABK76052.1

0.823

ABK70103.1

0.714

bioF

0.675

bioD

0.632

ABK70997.1

0.614

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70103.1	ABK70856.1	MSMEG_4757	MSMEG_2036	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK71811.1	MSMEG_4757	MSMEG_1352	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.714
ABK70103.1	ABK76052.1	MSMEG_4757	MSMEG_6815	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Identified by match to protein family HMM TIGR01409.	0.535
ABK70103.1	bioD	MSMEG_4757	MSMEG_3190	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.740
ABK70103.1	bioF	MSMEG_4757	MSMEG_3189	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.	0.761
ABK70856.1	ABK70103.1	MSMEG_2036	MSMEG_4757	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.677
ABK70856.1	ABK71573.1	MSMEG_2036	MSMEG_0629	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Trans-aconitate 2-methyltransferase.	0.828
ABK70856.1	ABK71811.1	MSMEG_2036	MSMEG_1352	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.908
ABK70856.1	ABK73536.1	MSMEG_2036	MSMEG_6710	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.830
ABK70856.1	bioD	MSMEG_2036	MSMEG_3190	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.507
ABK70856.1	bioF	MSMEG_2036	MSMEG_3189	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.	0.597
ABK70997.1	ABK71811.1	MSMEG_1954	MSMEG_1352	Identified by match to protein family HMM PF03109.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.614
ABK71573.1	ABK70856.1	MSMEG_0629	MSMEG_2036	Trans-aconitate 2-methyltransferase.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.828
ABK71573.1	ABK71811.1	MSMEG_0629	MSMEG_1352	Trans-aconitate 2-methyltransferase.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.831
ABK71573.1	ABK73536.1	MSMEG_0629	MSMEG_6710	Trans-aconitate 2-methyltransferase.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.831
ABK71573.1	bioD	MSMEG_0629	MSMEG_3190	Trans-aconitate 2-methyltransferase.	Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.600
ABK71573.1	bioF	MSMEG_0629	MSMEG_3189	Trans-aconitate 2-methyltransferase.	8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.	0.570
ABK71811.1	ABK70103.1	MSMEG_1352	MSMEG_4757	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.714
ABK71811.1	ABK70856.1	MSMEG_1352	MSMEG_2036	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.908
ABK71811.1	ABK70997.1	MSMEG_1352	MSMEG_1954	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	Identified by match to protein family HMM PF03109.	0.614

page 1 of 3

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About