Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK74588.1MmpL5 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. (967 aa)    
Predicted Functional Partners:
ABK70603.1
MmpS5 protein; Identified by match to protein family HMM PF05423.
  
 
 0.995
acpP
Acyl carrier protein; Acyl carrier protein involved in meromycolate extension.
   
 
 0.904
ABK73296.1
MmpS5 protein; Identified by match to protein family HMM PF05423.
     
 0.830
ABK72897.1
MmpS5 protein; Identified by match to protein family HMM PF05423.
     
 0.830
ABK73047.1
Transcriptional regulator; Identified by match to protein family HMM PF00440.
  
  
 0.775
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
   
 0.702
ABK73949.1
Conserved hypothetical protein.
  
     0.687
eccB3
Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
 
 
 
 0.641
ABK70620.1
Endonuclease IV; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587.
       0.623
ABK71982.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
     0.623
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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