Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71589.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (191 aa)    
Predicted Functional Partners:
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
     
 0.654
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
       0.638
ABK72749.1
Conserved hypothetical protein.
  
     0.587
ABK75011.1
Probable conserved transmembrane protein.
  
    0.571
ABK74136.1
Erp protein.
  
   
 0.568
ABK72741.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
     0.554
ABK70238.1
Lipoprotein, putative.
  
    0.513
ABK76106.1
Probable conserved transmembrane protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00924.
 
   
 0.504
ABK70897.1
Putative serine-threonine protein kinase.
  
  
 0.500
ABK70441.1
LprB protein.
       0.483
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.