Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72067.1FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070. (399 aa)    
Predicted Functional Partners:
ABK73646.1
Conserved hypothetical protein.
 
  
 0.975
ABK72099.1
Probable membrane sugar transferase; Identified by match to protein family HMM PF00535.
 
   
 0.968
ABK73068.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
  
 0.967
ABK75244.1
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.958
ABK70136.1
D-lactate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.
  
 0.900
pyk-2
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
  
 
 0.864
ABK73567.1
Aspartate aminotransferase; Identified by match to protein family HMM PF00155.
  
 
 0.857
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
    
 0.854
ABK71806.1
Acetolactate synthase; Identified by match to protein family HMM PF02775; match to protein family HMM PF02776.
  
 
 0.852
ilvB
Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.
  
 
 0.852
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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