Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
ABK74267.1TetR-family protein transcriptional regulator; Identified by match to protein family HMM PF00440. (198 aa)    
Predicted Functional Partners:
ABK74444.1
Putative oxidoreductase; Identified by match to protein family HMM PF00881.
     
 0.567
ABK75317.1
TonB-dependent receptor; Identified by match to protein family HMM PF02082; match to protein family HMM PF08220.
  
   
 0.523
dhaA
Haloalkane dehalogenase; Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.
 
   
 0.505
ABK75224.1
Oxidoreductase; Identified by match to protein family HMM PF00106.
 
   
 0.497
ABK74645.1
ISMsm1, transposase orfB; Identified by similarity to GP:16551202; match to protein family HMM PF00665.
   
  
 0.439
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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