Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72764.1Spfh domain/band 7 family protein, putative; Identified by match to protein family HMM PF01145. (526 aa)    
Predicted Functional Partners:
ABK75455.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.900
ABK71936.1
Membrane protein implicated in regulation of membrane protease activity; Identified by match to protein family HMM PF01957.
  
  
 0.664
ABK70275.1
Band 7 protein; Identified by match to protein family HMM PF01145.
  
 0.661
ABK74394.1
SpfH domain protein; Identified by match to protein family HMM PF01145.
  
 0.661
ABK71106.1
35 kDa protein; Identified by match to protein family HMM PF04012.
  
  
 0.621
ABK75641.1
Identified by match to protein family HMM PF00614.
  
  0.604
ABK74900.1
Conserved hypothetical protein.
  
  0.588
saeC
Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.
   
 0.584
ABK73118.1
Conserved hypothetical protein.
  
     0.546
ABK72199.1
Two-component sensor histidine kinase; Identified by match to protein family HMM PF00027; match to protein family HMM PF02518.
     
 0.539
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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