Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK74269.1Coenzyme B12-dependent glycerol dehydrogenase small subunit; Identified by match to protein family HMM PF02287. (142 aa)    
Predicted Functional Partners:
PduC
Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286.
 
 0.999
ABK69789.1
Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.
 
 0.999
ABK72195.1
Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286.
 
 0.953
ABK74740.1
Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286.
 
 0.953
ABK74550.1
PduH protein.
 
  
 0.884
ABK75675.1
Putative diol dehydratase reactivation protein.
 
  
 0.821
ABK75170.1
PduO protein; Identified by match to protein family HMM PF03928.
 
  
 0.802
ABK74671.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03928.
 
  
 0.794
ABK74854.1
Propanediol utilization protein PduA; Identified by match to protein family HMM PF00936.
 
  
 0.727
ABK74973.1
Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171.
 
  
 0.613
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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