Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK72334.1Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
ABK75941.1
Transporter, small conductance mechanosensitive ion channel (MscS) family protein; Identified by match to protein family HMM PF00924.
  
   
 0.844
ABK73483.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
      
 0.824
ABK73047.1
Transcriptional regulator; Identified by match to protein family HMM PF00440.
      
 0.822
ABK74248.1
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.751
ABK71106.1
35 kDa protein; Identified by match to protein family HMM PF04012.
  
    0.750
ABK69890.1
Conserved hypothetical protein.
  
     0.744
ABK76005.1
Conserved hypothetical protein.
  
    0.721
ABK71394.1
Conserved hypothetical protein.
  
     0.715
ABK75235.1
Conserved hypothetical protein.
  
    0.699
ABK73967.1
Probable conserved membrane protein; Identified by match to protein family HMM PF05108.
  
   
 0.682
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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