Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74637.1Identified by match to protein family HMM PF00881. (213 aa)    
Predicted Functional Partners:
bluB
cob(II)yrinic acid a,c-diamide reductase; Identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476.
     
 0.833
ABK74324.1
Oxidoreductase; Identified by match to protein family HMM PF03060.
  
  
 0.737
ABK70939.1
Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060.
  
  
 0.733
ABK73801.1
2-Nitropropane dioxygenase; Identified by match to protein family HMM PF03060.
  
  
 0.733
ABK70922.1
Probable forkhead-associated protein.
       0.638
ABK74121.1
Conserved hypothetical protein.
 
  
 0.632
ABK74515.1
Conserved hypothetical protein.
 
  
 0.623
ABK69784.1
Conserved hypothetical protein.
 
  
 0.622
ABK75680.1
2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.
  
  
 0.576
ABK71928.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00903.
 
  
 0.567
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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