STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72995.1Transcriptional regulator, AsnC family protein; Identified by match to protein family HMM PF01037. (156 aa)    
Predicted Functional Partners:
ABK74253.1
Taurine-pyruvate aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.955
ABK74745.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
ABK71885.1
Oxidoreductase; Identified by match to protein family HMM PF01266.
 
  
 0.703
ABK71047.1
glycine/D-amino acid oxidase; Identified by match to protein family HMM PF01266.
 
  
 0.665
ABK71967.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.645
ABK70032.1
Transcriptional regulator, AsnC family protein; Identified by match to protein family HMM PF01037.
  
     0.600
cobA
uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470.
  
 
 0.583
ABK70270.1
AsnC-family protein transcriptional regulator; Identified by match to protein family HMM PF01037.
  
     0.559
ABK73230.1
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
  
    0.558
ABK71861.1
Leucine-responsive regulatory protein; Identified by match to protein family HMM PF01037.
  
     0.519
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.