Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69787.1Regulatory protein, MarR; Identified by match to protein family HMM PF01047. (158 aa)    
Predicted Functional Partners:
ABK74234.1
Phosphoglucomutase/phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
  
 
 0.965
ABK74202.1
Conserved hypothetical protein.
     
 0.825
ABK69679.1
Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
      
 0.824
ribE
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
  
 
 0.618
ABK70467.1
Conserved hypothetical protein.
     
 0.603
ABK71336.1
Putative ammonia monooxygenase superfamily protein; Identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082.
       0.560
ABK69623.1
Sensory box/response regulator; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
     
 0.554
ABK73277.1
Identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583.
     
 0.553
ABK73391.1
Conserved hypothetical protein.
      
 0.544
ABK70164.1
LpqE protein.
      
 0.544
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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