Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK71263.1Xylose transport system permease protein XylH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (419 aa)    
Predicted Functional Partners:
ABK76012.1
ABC transporter.
 
 0.982
ABK72000.1
D-xylose transport ATP-binding protein XylG; Identified by match to protein family HMM PF00005.
 
 
 0.965
ABK72331.1
D-xylose-binding periplasmic protein.
 
 0.878
ABK75434.1
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 
 0.830
ABK69646.1
D-ribose-binding periplasmic protein RbsB; Identified by match to protein family HMM PF00532.
 
 
 0.813
ABK75370.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 
 0.812
ABK70633.1
D-ribose-binding periplasmic protein; Identified by match to protein family HMM PF00532.
 
 
 0.810
ABK74263.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 
 0.810
ABK75364.1
Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
 
 0.806
ABK75924.1
ABC transporter periplasmic-binding protein YtfQ; Identified by match to protein family HMM PF00532.
 
 
 0.790
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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