Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (501 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01234; Belongs to the ribulokinase family.
 
 
 0.999
ABK74006.1
L-ribulose-5-phosphate 4-epimerase UlaF; Identified by match to protein family HMM PF00596.
 
 
 0.985
ABK72872.1
Aldose 1-epimerase subfamily protein; Identified by match to protein family HMM PF01263.
  
 
 0.954
ABK71329.1
Identified by match to protein family HMM PF00232.
 
  
 0.950
ABK70975.1
Alpha-galactosidase; Identified by match to protein family HMM PF02056.
  
 
 0.941
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family.
 
   
 0.936
ABK74417.1
Putative sugar kinase protein; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
 
 
 0.901
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.833
ABK74701.1
NAD-dependent epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
     
 0.786
ABK76007.1
Gluconolactonase; Identified by match to protein family HMM PF03758.
     
  0.739
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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