Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK72773.1Conserved hypothetical protein. (71 aa)    
Predicted Functional Partners:
ABK71993.1
Methylase, putative; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00537.
 
    0.929
ABK70099.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
  0.857
ABK70243.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
  0.857
ABK75582.1
Conserved hypothetical protein.
 
    0.800
ABK73615.1
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.539
ABK71980.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
    0.532
ABK71756.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.489
ABK70259.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.460
ABK75281.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.449
ABK69687.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
  
     0.423
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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