Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69850.1Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
ABK75409.1
Conserved hypothetical protein.
 
  
 0.691
ABK75911.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.639
ABK75075.1
Cytochrome P450 monooxygenase.
 
    0.627
ABK75582.1
Conserved hypothetical protein.
 
    0.616
ABK75526.1
ChaB protein; Identified by match to protein family HMM PF06150.
  
  
 0.607
ABK70567.1
Conserved hypothetical protein.
 
    0.552
ABK69570.1
Conserved hypothetical protein.
 
  
 0.542
ABK70431.1
Cytochrome C biogenesis protein transmembrane region; Identified by match to protein family HMM PF02683.
 
  
 0.522
ABK70996.1
Conserved hypothetical protein.
   
  
 0.500
ABK72486.1
Conserved domain protein.
   
  
 0.484
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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