Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74824.1Stas domain, putative; Identified by match to protein family HMM PF01740. (142 aa)    
Predicted Functional Partners:
ABK71220.1
RsbW protein.
  
 0.840
ABK75635.1
Stas domain protein; Identified by match to protein family HMM PF01740.
  
 0.740
ABK76188.1
Magnesium or manganese-dependent protein phosphatase; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
  
 0.724
ABK72533.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 0.688
ABK71286.1
RsbW protein.
  
 0.663
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
 
 0.561
FbiC
FO synthase; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.
  
    0.542
ABK72665.1
RNA polymerase sigma-F factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02980; Belongs to the sigma-70 factor family.
  
 
 0.503
ABK75214.1
Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
  0.498
ABK69658.1
Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.
  
  
 0.496
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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